Cancer-miRNA Regulatory Network

Compendium of miRNA Target Genes

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Macromolecule Metabolic Process (GO:0043170) Genes Targeted by hsa-mir-124 in MM Myeloma Zhan Cluster 43 Table contains all genes in the MM Myeloma Zhan cluster number 43. If a gene harbors a predicted miRNA binding site by one of the three inference methods it is displayed in the final column: M = Weeder-miRvestigator predicted site, P = PITA predicted site and T = TargetScan predicted site. Entrez ID Symbol Description hsa-mir-124 GO:0043170 5922 RASA2 RAS p21 protein activator 2 [Source:HGNC Symbol;Acc:9872] zzz999 23526 HMHA1 histocompatibility (minor) HA-1 [Source:HGNC Symbol;Acc:17102] zzz999 3831 KLC1 kinesin light chain 1 [Source:HGNC Symbol;Acc:6387] zzz999 5894 RAF1 v-raf-1 murine leukemia viral oncogene homolog 1 [Source:HGNC Symbol;Acc:9829] zzz999 Yes 10134 BCAP31 B-cell receptor-associated protein 31 [Source:HGNC Symbol;Acc:16695] zzz999 10693 CCT6B chaperonin containing TCP1, subunit 6B (zeta 2) [Source:HGNC Symbol;Acc:1621] zzz999 Yes 5584 PRKCI protein kinase C, iota [Source:HGNC Symbol;Acc:9404] zzz999 Yes 23279 NUP160 nucleoporin 160kDa [Source:HGNC Symbol;Acc:18017] zzz999 5883 RAD9A RAD9 homolog A (S. pombe) [Source:HGNC Symbol;Acc:9827] zzz999 Yes 2592 GALT galactose-1-phosphate uridylyltransferase [Source:HGNC Symbol;Acc:4135] zzz999 9112 MTA1 metastasis associated 1 [Source:HGNC Symbol;Acc:7410] zzz999 Yes 4999 ORC2 origin recognition complex, subunit 2 [Source:HGNC Symbol;Acc:8488] P Yes 23157 SEPT6 septin 6 [Source:HGNC Symbol;Acc:15848] zzz999 23398 PPWD1 peptidylprolyl isomerase domain and WD repeat containing 1 [Source:HGNC Symbol;Acc:28954] zzz999 Yes 3636 INPPL1 inositol polyphosphate phosphatase-like 1 [Source:HGNC Symbol;Acc:6080] zzz999 Yes 5295 PIK3R1 phosphoinositide-3-kinase, regulatory subunit 1 (alpha) [Source:HGNC Symbol;Acc:8979] T 11168 PSIP1 PC4 and SFRS1 interacting protein 1 [Source:HGNC Symbol;Acc:9527] zzz999 Yes 50618 ITSN2 intersectin 2 [Source:HGNC Symbol;Acc:6184] P T 22794 CASC3 cancer susceptibility candidate 3 [Source:HGNC Symbol;Acc:17040] P T Yes 1642 DDB1 damage-specific DNA binding protein 1, 127kDa [Source:HGNC Symbol;Acc:2717] zzz999 Yes 5702 PSMC3 proteasome (prosome, macropain) 26S subunit, ATPase, 3 [Source:HGNC Symbol;Acc:9549] zzz999 Yes 7421 VDR vitamin D (1,25- dihydroxyvitamin D3) receptor [Source:HGNC Symbol;Acc:12679] zzz999 Yes 1571 CYP2E1 cytochrome P450, family 2, subfamily E, polypeptide 1 [Source:HGNC Symbol;Acc:2631] zzz999 3181 HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:HGNC Symbol;Acc:5033] P T Yes 47 ACLY ATP citrate lyase [Source:HGNC Symbol;Acc:115] zzz999 9584 RBM39 RNA binding motif protein 39 [Source:HGNC Symbol;Acc:15923] zzz999 Yes 9785 DHX38 DEAH (Asp-Glu-Ala-His) box polypeptide 38 [Source:HGNC Symbol;Acc:17211] zzz999 Yes 10181 RBM5 RNA binding motif protein 5 [Source:HGNC Symbol;Acc:9902] zzz999 Yes 9798 KIAA0174 KIAA0174 [Source:HGNC Symbol;Acc:28977] T 4676 NAP1L4 nucleosome assembly protein 1-like 4 [Source:HGNC Symbol;Acc:7640] zzz999 7297 TYK2 tyrosine kinase 2 [Source:HGNC Symbol;Acc:12440] T Yes 3310 HSPA6 heat shock 70kDa protein 6 (HSP70B') [Source:HGNC Symbol;Acc:5239] zzz999 9667 SAFB2 scaffold attachment factor B2 [Source:HGNC Symbol;Acc:21605] zzz999 Yes 1871 E2F3 E2F transcription factor 3 [Source:HGNC Symbol;Acc:3115] P T Yes 1785 DNM2 dynamin 2 [Source:HGNC Symbol;Acc:2974] zzz999 Yes 5430 AMAC1L3 acyl-malonyl condensing enzyme 1-like 3 [Source:HGNC Symbol;Acc:31351] zzz999 Yes 9101 USP8 ubiquitin specific peptidase 8 [Source:HGNC Symbol;Acc:12631] zzz999 Yes 7508 XPC xeroderma pigmentosum, complementation group C [Source:HGNC Symbol;Acc:12816] zzz999 Yes 8021 NUP214 nucleoporin 214kDa [Source:HGNC Symbol;Acc:8064] zzz999 Yes 3337 DNAJB1 DnaJ (Hsp40) homolog, subfamily B, member 1 [Source:HGNC Symbol;Acc:5270] zzz999 Yes 10188 TNK2 tyrosine kinase, non-receptor, 2 [Source:HGNC Symbol;Acc:19297] zzz999 Yes 3192 HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) [Source:HGNC Symbol;Acc:5048] T Yes 6687 SPG7 spastic paraplegia 7 (pure and complicated autosomal recessive) [Source:HGNC Symbol;Acc:11237] zzz999 Yes 81576 CCDC130 coiled-coil domain containing 130 [Source:HGNC Symbol;Acc:28118] zzz999 10788 IQGAP2 IQ motif containing GTPase activating protein 2 [Source:HGNC Symbol;Acc:6111] P T 50717 DCAF8 DDB1 and CUL4 associated factor 8 [Source:HGNC Symbol;Acc:24891] zzz999 Yes 2729 GCLC glutamate-cysteine ligase, catalytic subunit [Source:HGNC Symbol;Acc:4311] zzz999 Yes 54741 LEPROT leptin receptor overlapping transcript [Source:HGNC Symbol;Acc:29477] zzz999 8893 EIF2B5 eukaryotic translation initiation factor 2B, subunit 5 epsilon, 82kDa [Source:HGNC Symbol;Acc:3261] zzz999 Yes 10482 NXF1 nuclear RNA export factor 1 [Source:HGNC Symbol;Acc:8071] P Yes 5566 PRKACA protein kinase, cAMP-dependent, catalytic, alpha [Source:HGNC Symbol;Acc:9380] zzz999 Yes 5685 PSMA4 proteasome (prosome, macropain) subunit, alpha type, 4 [Source:HGNC Symbol;Acc:9533] zzz999 Yes 6627 SNRPA1 small nuclear ribonucleoprotein polypeptide A' [Source:HGNC Symbol;Acc:11152] zzz999 Yes 3836 KPNA1 karyopherin alpha 1 (importin alpha 5) [Source:HGNC Symbol;Acc:6394] T Yes 6198 RPS6KB1 ribosomal protein S6 kinase, 70kDa, polypeptide 1 [Source:HGNC Symbol;Acc:10436] T Yes 10520 ZNF211 zinc finger protein 211 [Source:HGNC Symbol;Acc:13003] zzz999 Yes 10866 zzz999 zzz999 zzz999 55922 NKRF NFKB repressing factor [Source:HGNC Symbol;Acc:19374] P T Yes 9284 NPIP nuclear pore complex interacting protein [Source:HGNC Symbol;Acc:7909] zzz999 9984 THOC1 THO complex 1 [Source:HGNC Symbol;Acc:19070] zzz999 Yes 8241 RBM10 RNA binding motif protein 10 [Source:HGNC Symbol;Acc:9896] zzz999 Yes 6638 SNRPN small nuclear ribonucleoprotein polypeptide N [Source:HGNC Symbol;Acc:11164] zzz999 Yes 7375 USP4 ubiquitin specific peptidase 4 (proto-oncogene) [Source:HGNC Symbol;Acc:12627] zzz999 Yes 3590 IL11RA interleukin 11 receptor, alpha [Source:HGNC Symbol;Acc:5967] zzz999 3588 IL10RB interleukin 10 receptor, beta [Source:HGNC Symbol;Acc:5965] T 9220 TIAF1 TGFB1-induced anti-apoptotic factor 1 [Source:HGNC Symbol;Acc:11803] zzz999 5771 PTPN2 protein tyrosine phosphatase, non-receptor type 2 [Source:HGNC Symbol;Acc:9650] zzz999 Yes 7593 MZF1 myeloid zinc finger 1 [Source:HGNC Symbol;Acc:13108] zzz999 Yes 10479 SLC9A6 solute carrier family 9 (sodium/hydrogen exchanger), member 6 [Source:HGNC Symbol;Acc:11079] zzz999 7726 TRIM26 tripartite motif containing 26 [Source:HGNC Symbol;Acc:12962] zzz999 2870 GRK6 G protein-coupled receptor kinase 6 [Source:HGNC Symbol;Acc:4545] zzz999 Yes 545 ATR ataxia telangiectasia and Rad3 related [Source:HGNC Symbol;Acc:882] zzz999 Yes 10659 CELF2 CUGBP, Elav-like family member 2 [Source:HGNC Symbol;Acc:2550] zzz999 Yes 10299 MARCH6 membrane-associated ring finger (C3HC4) 6 [Source:HGNC Symbol;Acc:30550] zzz999 Yes 9057 SLC7A6 solute carrier family 7 (cationic amino acid transporter, y+ system), member 6 [Source:HGNC Symbol;Acc:11064] T 11073 TOPBP1 topoisomerase (DNA) II binding protein 1 [Source:HGNC Symbol;Acc:17008] T Yes 393 ARHGAP4 Rho GTPase activating protein 4 [Source:HGNC Symbol;Acc:674] zzz999 10227 MFSD10 major facilitator superfamily domain containing 10 [Source:HGNC Symbol;Acc:16894] zzz999 5529 PPP2R5E protein phosphatase 2, regulatory subunit B', epsilon isoform [Source:HGNC Symbol;Acc:9313] T 8314 BAP1 BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase) [Source:HGNC Symbol;Acc:950] zzz999 Yes 2908 NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) [Source:HGNC Symbol;Acc:7978] P Yes 1307 COL16A1 collagen, type XVI, alpha 1 [Source:HGNC Symbol;Acc:2193] zzz999 11140 CDC37 cell division cycle 37 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:1735] zzz999 Yes 6294 SAFB scaffold attachment factor B [Source:HGNC Symbol;Acc:10520] zzz999 Yes 7076 TIMP1 TIMP metallopeptidase inhibitor 1 [Source:HGNC Symbol;Acc:11820] zzz999 Yes 3295 HSD17B4 hydroxysteroid (17-beta) dehydrogenase 4 [Source:HGNC Symbol;Acc:5213] zzz999 5930 RBBP6 retinoblastoma binding protein 6 [Source:HGNC Symbol;Acc:9889] zzz999 9632 SEC24C SEC24 family, member C (S. cerevisiae) [Source:HGNC Symbol;Acc:10705] zzz999 Yes 7248 TSC1 tuberous sclerosis 1 [Source:HGNC Symbol;Acc:12362] zzz999 Yes 7307 U2AF1 U2 small nuclear RNA auxiliary factor 1 [Source:HGNC Symbol;Acc:12453] zzz999 Yes 889 KRIT1 KRIT1, ankyrin repeat containing [Source:HGNC Symbol;Acc:1573] zzz999 7629 ZNF76 zinc finger protein 76 [Source:HGNC Symbol;Acc:13149] zzz999 Yes 9794 MAML1 mastermind-like 1 (Drosophila) [Source:HGNC Symbol;Acc:13632] P T Yes 1495 CTNNA1 catenin (cadherin-associated protein), alpha 1, 102kDa [Source:HGNC Symbol;Acc:2509] zzz999 58517 RBM25 RNA binding motif protein 25 [Source:HGNC Symbol;Acc:23244] zzz999 Yes 23173 METAP1 methionyl aminopeptidase 1 [Source:HGNC Symbol;Acc:15789] zzz999 Yes 9138 ARHGEF1 Rho guanine nucleotide exchange factor (GEF) 1 [Source:HGNC Symbol;Acc:681] P T 27332 ZNF638 zinc finger protein 638 [Source:HGNC Symbol;Acc:17894] zzz999 Yes 7293 TNFRSF4 tumor necrosis factor receptor superfamily, member 4 [Source:HGNC Symbol;Acc:11918] zzz999 Yes 9354 UBE4A ubiquitination factor E4A (UFD2 homolog, yeast) [Source:HGNC Symbol;Acc:12499] P T Yes 7695 ZNF136 zinc finger protein 136 [Source:HGNC Symbol;Acc:12920] T Yes 147179 WIPF2 WAS/WASL interacting protein family, member 2 [Source:HGNC Symbol;Acc:30923] P T 4299 AFF1 AF4/FMR2 family, member 1 [Source:HGNC Symbol;Acc:7135] T 1286 COL4A4 collagen, type IV, alpha 4 [Source:HGNC Symbol;Acc:2206] T 4671 NAIP NLR family, apoptosis inhibitory protein [Source:HGNC Symbol;Acc:7634] zzz999 23506 KIAA0240 KIAA0240 [Source:HGNC Symbol;Acc:21111] zzz999 23054 NCOA6 nuclear receptor coactivator 6 [Source:HGNC Symbol;Acc:15936] zzz999 Yes 10902 BRD8 bromodomain containing 8 [Source:HGNC Symbol;Acc:19874] zzz999 Yes 4090 SMAD5 SMAD family member 5 [Source:HGNC Symbol;Acc:6771] P T Yes 9931 HELZ helicase with zinc finger [Source:HGNC Symbol;Acc:16878] T 3842 TNPO1 transportin 1 [Source:HGNC Symbol;Acc:6401] zzz999 Yes

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